{
  "primitives": [
    {
      "id": "message-passing",
      "label": "Message passing over a relational graph",
      "source_term": "GNN / MPNN"
    },
    {
      "id": "equivariance",
      "label": "Equivariance under a symmetry group",
      "source_term": "SE(3)-Equivariant Diffusion"
    },
    {
      "id": "cross-attention-alignment",
      "label": "Learned alignment between two sequences",
      "source_term": "Transformer Cross-Attention"
    },
    {
      "id": "energy-landscape",
      "label": "Energy landscape with minima and barriers",
      "source_term": "EBM / QUBO"
    },
    {
      "id": "sequential-lookahead",
      "label": "Sequential decision under uncertainty with lookahead",
      "source_term": "RL / MCTS"
    }
  ],
  "verified_bridges": [
    {
      "primitive_id": "message-passing",
      "source_term": "GNN / MPNN",
      "target_term": "Valence graphs / Fukui indices",
      "tools": "Chemprop · RDKit · QM9"
    },
    {
      "primitive_id": "equivariance",
      "source_term": "SE(3)-Equivariant Diffusion",
      "target_term": "3D conformers / stereochemistry",
      "tools": "DiffDock · RFdiffusion"
    },
    {
      "primitive_id": "cross-attention-alignment",
      "source_term": "Transformer Cross-Attention",
      "target_term": "Single-step retrosynthesis",
      "tools": "Molecular Transformer · USPTO-50k"
    },
    {
      "primitive_id": "energy-landscape",
      "source_term": "EBM / QUBO",
      "target_term": "Potential energy surface / Eyring barriers",
      "tools": "CREST/xTB · ORCA"
    },
    {
      "primitive_id": "sequential-lookahead",
      "source_term": "RL / MCTS",
      "target_term": "Multi-step synthesis trees",
      "tools": "AiZynthFinder · PaRoutes"
    }
  ],
  "open_domains": [
    {
      "id": "materials-science",
      "label": "Materials Science"
    },
    {
      "id": "structural-biology",
      "label": "Structural Biology"
    },
    {
      "id": "synthetic-biology",
      "label": "Synthetic Biology"
    },
    {
      "id": "catalysis",
      "label": "Catalysis"
    },
    {
      "id": "drug-discovery",
      "label": "Drug Discovery"
    },
    {
      "id": "climate-modeling",
      "label": "Climate Modeling"
    },
    {
      "id": "neuroscience",
      "label": "Neuroscience"
    }
  ],
  "phases": [
    {
      "n": 1,
      "name": "Isomorphic Mapping",
      "start": 0,
      "end": 300
    },
    {
      "n": 2,
      "name": "Elaborative Interrogation",
      "start": 300,
      "end": 600
    },
    {
      "n": 3,
      "name": "Dynamic Scaffolding",
      "start": 600,
      "end": 900
    },
    {
      "n": 4,
      "name": "Spaced Retrieval",
      "start": 900,
      "end": 1200
    }
  ]
}